Publikacje

Rok:   2019   2018   2017   2016   2015   2014   2013   2012   2011   2010   2009

1. Marczyk M, Fu C, Lau R, Du L, Trevarton AJ, Sinn BV, Gould RE, Pusztai L, Hatzis C, Symmans WF: The impact of RNA extraction method on accurate RNA sequencing from formalin-fixed paraffin-embedded tissues. BMC Cancer 2019, 19, 1189

2. Justyna Mika, Sylwia Kabacik, Christophe Badie, Joanna Polanska and Serge M. Candéias: Germline DNA retention in murine and human rearranged T cell receptor gene coding joints: alternative recombination signal sequences and V(D)J recombinase errors. Frontiers in Immunology, 2019, 10:2637, doi: 10.3389/fimmu.2019.02637

3. O'Brien G., Cruz-Garcia L., Zyla J., Brown N., Finnon R., Polanska J., Badie C.: Kras mutations and PU.1 promoter methylation are new pathways in murine radiation-induced AML, Carcinogenesis, 2019, doi: 10.1093/carcin/bgz175

4. Marta Gawin, Agata Kurczyk, Ewa Stobiecka, Katarzyna Frątczak, Joanna Polanska, Monika Pietrowska, Piotr Widłak: Molecular heterogeneity of papillary thyroid cancer: comparison of primary tumors and synchronous metastases in regional lymph nodes by mass spectrometry imaging. Endocrine Pathology, 2019, doi: 10.1007/s12022-019-09593-2

5. Walczak Przemyslaw, Daszynska-Daszkiewicz Jadwi, Pigulski A., Pamyatnykh A., Moffat A., Handler G., Pablo H., Popowicz Adam, Wade G., Weiss W. and Zwintz K.. Seismic modelling of early B-type pulsators observed by BRITE - I. θ Ophiuchi, 2019. MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY, vol. 485, no. 3, pp. 3544-3557

6. Joanna Zyla; Michal Marczyk; Teresa Domaszewska; Stefan H.E. Kaufmann; Joanna Polanska; January Weiner: Gene set enrichment for reproducible science: comparison of CERNO and eight other algorithms. Bioinformatics, 2019, doi: 10.1093/bioinformatics/btz447

7. Zwintz K., Reese D.R., Neiner C., Pigulski A., Kuschnig R., Muller M., Zieba S., Abe L., Guillot T., Handler G., Kenworthy M., Stuik R., Moffat A., Popowicz Adam, Rucinski S., Wade G., Weiss W., Bailay J., Crawford S., Ireland M., Lomberg B., Mamajek E., Mellon S. and Talens G.J.. Revisiting the pulsational characteristics of the exoplanet host star Beta-Pictoris, 2019. ASTRONOMY & ASTROPHYSICS, vol. (in press), no. (in press), pp. (in press)

8. Kallinger T., Beck P.G., Hekker S, Huber D., Kuschnig R., Rockenbauer M, Winter P.M., Weiss W., Handler G., Moffat A., Pigulski A., Popowicz Adam, Wade G. and Zwintz K.. Stellar masses from granulation and oscillations of 23 bright redgiants observed by BRITE -Constellation, 2019. ASTRONOMY & ASTROPHYSICS, vol. accepted, no. accepted, pp. accepted

9. Jablonska P, Mierzejewska P, Kutryb-Zajac B, Rzyman W, Dziadziuszko R, Polanska J, Sitkiewicz M, Smolenski RT, Slominska EM. Increased plasma concentration of 4-pyridone-3-carboxamide-1-ß-D-ribonucleoside (4PYR) in lung cancer. Preliminary studies. Nucleosides Nucleotides Nucleic Acids. 2019, 38(10):781-787, doi: 10.1080/15257770.2019.1600705

10. Foldi J, O’Meara T, Marczyk M, Sanft T, Silber A, Pusztai L: Defining Risk of Late Recurrence in Early-Stage Estrogen Receptor–Positive Breast Cancer: Clinical Versus Molecular Tools. Journal of Clinical Oncology 2019, 37(16), p. 1365-69

11. Topór-Mądry Roman, Wojtyniak Bogdan, Strojek Krzysztof, Rutkowski Daniel, Bogusławski Stefan, Ignaszewska-Wyrzykowska Agata, Jarosz-Chobot Przemysława, Czech Marcin, Kozierkiewicz Adam, Chlebus Krzysztof, Jędrzejczyk Tadeusz, Myśliwiec Małgorzata, Polanska Joanna, Wysocki Mirosław, Zdrojewski Tomasz: Prevalence of diabetes in Poland: a combined analysis of national databases. Diabetic Medicine, 2019, doi: 10.1111/dme.13949

12. Ostrowski Marcin, Marczyk Michał, Dziedzic Robert, Jelitto-Górska Małgorzata, Marjański Tomasz, Pisiak Sylwia, Jędrzejczyk Tadeusz, Polanska Joanna, Zdrojewski Tomasz, Wojtyniak Bogdan, Rzyman Witold: Lung cancer and comorbidities in lung cancer screening participants. Five-year follow-up of Gdańsk screening cohort. European Journal of Public Health, 2019, 29(6), p. 1114-7

13. L. Malinski, B. Smolka, Self‑tuning fast adaptive algorithm for impulsive noise suppression in color images, Journal of Real-Time Image Processing, https://doi.org/10.1007/s11554-019-00853-2, published online 14.02.2019

14. Ewelina A. Dziedzic, Jakub S. Gąsior, Mariusz Pawłowski, Beata Wodejko-Kucharska, Tomasz Saniewski, Anna Marcisz, Marek J. Dąbrowski. Vitamin D level is associated with severity of coronary artery atherosclerosis and incidence of acute coronary syndromes in non-diabetic cardiac patients. Archives of Medical Science 2019; 15, 2: 359–368. doi: 10.5114/aoms.2019.83291

15. Agata Chobot, Joanna Stompór, Karolina Szyda, Magdalena Sokołowska, Grażyna Deja, Joanna Polanska, Przemysława Jarosz-Chobot: Remission phase in children diagnosed with type 1 diabetes (T1DM) in years 2012-2013 in Silesia, Poland – an observational study. Pediatric Diabetes, 2019, 20(3):286-292 doi:10.1111/pedi.12824

16. Aleksandra Pfeifer, Dagmara Rusinek, Jadwiga Żebracka-Gala, Agnieszka Czarniecka, Ewa Chmielik, Ewa Zembala-Nożyńska, Bartosz Wojtaś, Bartłomiej Gielniewski, Sylwia Szpak-Ulczok, Małgorzata Oczko-Wojciechowska, Jolanta Krajewska, Joanna Polanska, Barbara Jarząb: Novel TG-FGFR1 and TRIM33-NTRK1 Transcript Fusions in Papillary Thyroid Carcinoma, Genes, Chromosomes and Cancer, 2019, 58(8):558–566, doi: 10.1002/gcc.22737

17. Agata Abramowicz, Anna Wojakowska, Lukasz Marczak, Malgorzata Lysek-Gladysinska, Mateusz Smolarz, Michael Story, Joanna Polanska, Piotr Widlak, Monika Pietrowska: Ionizing radiation affects the composition of the proteome of extracellular vesicles released by head and neck cancer cells in vitro, Journal Radiation Research, 2019, 60(3):289-297, doi: 10.1093/jrr/rrz001

18. Zyla J., Kabacik S., O'Brien G., Wakil S., Al-Harbi N., Kaprio J., Badie C., Polanska J. and Alsbeih G.: Combining CDKN1A gene expression and genome wide SNPs in a twin cohort to gain insight into heritability of individual radiosensitivity, Functional and Integrative Genomics, 2019, 19:575–585 doi:10.1007/s10142-019-00658-3

19. Katarzyna Bednarczyk, Marta Gawin, Mykola Chekan, Agata Kurczyk, Grzegorz Mrukwa, Monika Pietrowska, Joanna Polanska, Piotr Widłak: Discrimination of normal oral mucosa from oral cancer by mass spectrometry imaging of proteins and lipids, International Journal of Molecular Histology, 2019; 50(1):1-10, doi: 10.1007/s10735-018-9802-3

20. Papiez, Anna, Michal Marczyk, Joanna Polanska, and Andrzej Polanski. "BatchI: Batch effect Identification in high-throughput screening data using a dynamic programming algorithm." Bioinformatics 35, no. 11 (2019): 1885.

21. Papiez Anna, Badie Christophe, Polanska Joanna: Machine learning techniques combined with dose profiles indicate radiation response biomarkers. International Journal of Applied Mathematics and Computer Science, 2019, 29(1), pp.169-178, doi:10.2478/amcs-2019-0013.

22. Marczyk M, Jaksik R, Polanski A, Polanska J: GaMRed – adaptive filtering of high-throughput biological data. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019, doi: 10.1109/TCBB.2018.2858825

23. O’Meara T, Marczyk M, Blenman KRM, Yaghoobi V, Pelenkanou V, Rimm D, Pusztai L: Immunological differences between immune-rich estrogen receptor-positive and -negative breast cancers. Annals of Oncology, 30(Supplement_5), mdz240.011. 44th ESMO Congress, Barcelona, Spain, September 27 – October 1, 2019

24. Tobiasz J., Al-Harbi N., Bin Judia S., Majid S., Alsbeih G., Polanska J., How accurately can we predict Surviving Fraction after Irradiation based on the Copy Number State? 4th European Radiation Protection Week ERPW 2019. Book of abstracts, p. 135. 14-18.10.2019, Stockholm, Sweden

25. Nalepa J, Mrukwa G, Piechaczek S, Lorenzo PR, Marcinkiewicz M, Bobek-Billewicz B, Wawrzyniak P, Ulrych P, Szymanek J, Cwiek M, Dudzik W. Data Augmentation via Image Registration. In2019 IEEE International Conference on Image Processing (ICIP) 2019 Sep 22 (pp. 4250-4254). IEEE.

26. Anna Glodek, Marta Gawin, Mykola Chekan, Monika Pietrowska, Jacek Łęski, Joanna Polanska, Can the spatial distribution in MSI support the identification of the isotopic envelope?, CEEPC 2019, 23 - 26.09.2019, Ustroń, Poland

27. Łabaj Wojciech, Mika Justyna, Chekan Mykola, Pietrowska Monika, Widłak Piotr and Polański Andrzej. BIOLOGICAL PROCESSES ASSOCIATED WITH MUTATIONS PRESENT IN ANAPLASTIC AND PAPILLARY THYROID CANCERS CO-EXISTING IN THE SAME THYROID, 2019. 13th Central and Eastern European Proteomic Conference (CEEPC), 23/09/2019-25/09/2019, Ustron, Polska, pp. P-14

28. Mika Justyna, Candeias Serge and Polanska Joanna. Modelling of T cell receptor repertoire diversity in age, sex and functionality status of its sequences, 2019. XII Symposium of Polish Bioinformatics Society (PTBI), 19/09/2019-21/09/2019, Kraków, Poland, pp. 78

29. Frątczak K, Gawin M, Pietrowska M, Chekan M, Widłak P, Polanska J:Comparative classification study for pan-cancer mass spectrometry imaging data, CEEPC13,23-26.09.2019, Ustoń, Poland

30. A. Papiez, O. Azimzadeh, S. Tapio, J. Polanska , Proteomics validation analysis for ischemic heart disease in Mayak workers, Proceedings of the 13th Central and Eastern European Proteomic Conference, 23-26.09.2019,Ustron, Poland.

31. Paweł Pendziałek, Joanna Polanska: Can unsupervised clustering of the mass spectrometry imaging data serve as a nearly lossless compression method? 21st Polish Conference on Biocybernetics and Biomedical Engineering, 25-27.09.2019, Zielona Gora, Poland

32. Szymon Pyka, Michal Marczyk, Christos Hatzis, Joanna Polanska: Using single-cell RNA sequencing to capture pharmacodynamics in combination therapy of Triple Negative Breast Cancer. 21st Polish Conference on Biocybernetics and Biomedical Engineering, 25-27.09.2019, Zielona Gora, Poland

33. Tobiasz J., Al-Harbi N., Bin Judia S., Majid S., Alsbeih G., Polanska J., Copy Number State differences between extremely radiosensitive and extremely radioresistant patients. XII Symposium of Polish Bioinformatics Society. Book of abstracts, p. 76. 19-21.09.2019, Cracow, Poland

34. Marcin Ostrowski, Franciszek Binczyk, Tomasz Marjański, Robert Dziedzic, Joanna Polanska, Witold Rzyman: Are Risk Prediction Models Superior Over Standard Criteria for Lung Cancer Screening in Europe? Macroscale Simulation on Large Polish Cohort. IASLC World Conference on Lung Cancer (WCLC 2019) September 7 — 10, 2019, Barcelona, Spain

35. Aleksandra Pisarek, Ewelina Pośpiech, Anna Papiez, Antonia Heidegger, Catarina Xavier, Ramya Potabattula, Marta Sikora-Polaczek, Aneta Macur, Jarosław Janeczko, Thomas Haaf, Joanna Polanska, Walther Parson, Manfred Kayser, Wojciech Branicki on behalf of the VISAGE Consortium Epigenetic age estimation in semen samples – on the way to good markers and methods. 28th International Congress of International Society for Forensic Genetics (ISFG), Prague, September 9-13, 2019

36. Anna Papiez, Christophe Badie, Joanna Polanska, Feature selection based on dose profiles for radiation response biomarker research. Statistical Challenges in Medical Data Science, Ascona Workshop 2019, Ascona, Switzerland, Abstract Book, p.36.

37. Lourdes Cruz-Garcia, Malgorzata Kamuda, Christophe Badie, Joanna Polanska: Is there any similarity in gene expression profile in response to radiation therapy, independently of the cancer type? ConRad 2019 Global Conference on Radiation Topics. Preparedness, Response, Protection and Research; 23rd Nuclear Medical Defence Conference, May 13-16 2019, Munich

38. Frątczak K, Gawin M, Pietrowska M, Chekan M, Widłak P, Polanska J: Pan Cancer analysis of similarities and differences in hormonal cancers and environmental cancers using MALDI-MSI, European Molecular Imaging Meeting, 19-22.03.2019, Glasgow, p. 86

39. G. Mrukwa, K. Fratczak, M. Gawin, M. Chekan, M. Pietrowska, P. Widlak, J. Polanska, Biological Diversity or Numeric Artifact? MSI Data Clustering Robustness, European Molecular Imaging Meeting 2019, Glasgow, March 19-22, 2019

40. Qing T, Marczyk M, Wali V, Gunasekharan V, Patwardhan G, Pusztai L, Hatzis C: Pathway level complementarity of germline and somatic events in breast cancer. Cancer Research 2019, 79 (4 Supplement), P4-03-01. Proccedings of San Antonio Breast Cancer Symposium, San Antonio, TX, USA, December 4-8, 2018

41. Marczyk M, Fu C, Lau R, Du L, Trevarton AJ, Sinn BV, Gould RE, Symmans WF, Hatzis C: Pre-analytical effects of FFPE extraction methods on targeted and whole transcriptome sequencing assays for endocrine sensitivity in metastatic breast cancer. Cancer Research 2019, 79 (4 Supplement), P4-08-20. Proccedings of San Antonio Breast Cancer Symposium, San Antonio, TX, USA, December 4-8, 2018

42. Marczyk M, Gunasekharan V, Wali VB, Shi W, Patwardhan G, Qing T, Pusztai L, Hatzis C: Targeting loss of isoenzyme diversity as a novel therapeutic strategy in breast cancer. Cancer Research 2019, 79 (4 Supplement), P2-06-06. Proccedings of San Antonio Breast Cancer Symposium, San Antonio, TX, USA, December 4-8, 2018

43. Mrukwa G, Frątczak K, Polanska J: Hybrid Clustering Method for Highly Dimensional Data. 12th Symposium of the Polish Bioinformatics Society, 19-21 September 2019, Kraków, Poland

44. Anna Glodek, Joanna Polanska: Metody identyfikacji obwiedni izotopowych w danych z obrazowania molekularnego MALDI-ToF, Śląskie Spotkania Naukowe 2019, 10-11.05.2019, Kroczyce

45. Joanna Tobiasz, Christos Hatzis, and Joanna Polanska: Breast cancer heterogeneity investigation: multiple k-means clustering approach. 2019 IEEE 19th International Conference on Bioinformatics and Bioengineering (BIBE), October 28-30, 2019, Athens, Greece. p. 410-414, doi: 10.1109/BIBE.2019.00080

46. Kinga Leszczorz, Omid Azimzadeh, Soile Tapio, Michael Atkinson, Joanna Polanska: Mathematical modelling and effect size analysis in support of searching for the proteomic signature of radiotherapy toxicity, 2019 IEEE 19th International Conference on Bioinformatics and Bioengineering (BIBE), October 28-30 2019: 244 - 249, Athens, Greece, 978-1-7281-4617-1, doi: 10.1109/BIBE.2019.00051